Software
Software Links
- Locus Technology, Inc Colony management, supports creation and tracking of research animals: transgenic and congenic lines, knockouts and outbred strains.
- Alice Software Database system to build and publish synonymised checklists of species. Species descriptions include pre-established fields and detailed descriptions employing any number of user-defined fields.
- DRIFT Graphically represents the effect of genetic drift on gene frequency of one or more populations for a single locus, two allele model in a closed population using stochastic simulation methods. The dos program is free.
- MapPop Software for selective mapping and bin mapping by Daniel Brown and Todd Vision. WIN version, documentation and references are available here.
- Computational Genetics Software Information-based approach to genetics where computational tools are used instead of wet-lab techniques . It is related to statistical genetics but differs by using techniques developed in computer science .
- Whitehead Institute Center for Genome Research Follow the links for GeneHunter, MapMaker, Primer, and RHMapper documentation and free software, in UNIX and C source code.
- Finnish Forest Genetics and Tree Breeding Links to population and quantitative genetic software of interest in tree improvement, but also useful in other species.
- Istituto di Genetica Biochimica ed Evoluzionistica Program that performs a permutation-based statistical test to detect genetic divergence among populations from DNA fingerprinting data . Downloadable source Fortran code, executable files and user manual .
- MuStaR Sequence Variant Database Software Designed to create a database of mutation loci, to make this information available to as many people as possible.
- TagSorter Database application designed to simplify the collation, sorting, comparison and identification of SAGE tag sequences.
- Genetic Network Maps as Java Applets Genetic networks controlling development in Sea Urchin represented as Java applets. Formal scheme. Molecular interactions modelled as Petri Net.
- PopGen Software that models population genetics with emphasis on genetic drift, selection, and migration.
- Big Bench Software Database application designed for transgenic mouse colonies. A complete colony management software solution for Macintosh . Downloadable demo version .
- The BioCatalog Software directory of general interest in molecular biology and genetics.
- Linkage Analysis Software List Extensive list of linkage, mapping and pedigree software with links for obtaining copies.
- Genetics Software RASA 2.2 and other Mac software for phylogenetics, comparative genomics, and sequence analysis - from Penn State University.
- Computational Methods & Algorithms Group Extensive genetic linkage analysis application resources on high performance computer systems .
- Advanced Genetics Wizard Online program that calculates the distribution of offspring genotypes from dominant, codominant and recessive gene crosses, for up to 6 genes.
- Progeny Software Program for genetic research and analysis with a built-in customizable relational database to manage family data and produce pedigrees quickly.
- Hands on Genetics Instructional software for basic genetics, such as DNA, PCR, Mendel, Hardy-Weinberg, meiosis and computer simulations. Download WIN and MAC demos and order online.
- STRand Open-source program to automate or speed up the analysis of DNA fragment length polymorphism samples run on fluorescence based gels . Instructions for use and program download available .
- GeneticStudio A complete suite of population genetic analysis programs for MAC . Includes plugin modules, and the Studio environment allows others to add more.
- Sewall Wright Institute - Linkage Links Page of links to information and software for linkage and gene mapping.
- Applied Biosystems Integrated software product designed to provide automation, high throughput, and high allele-calling accuracy for linkage mapping and human identification applications. Windows NT .
- MultiMap Program designed for automated construction of genetic maps from The Rockefeller University.
- Global Pedigree Services Offers the capability to use interactive telephone and internet technology to collect, analyze, display, modify and distribute pedigree information in a faster, less expensive, and confidential method.
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